Category Archives: Chinook Salmon

Butte Creek Spring-Run Salmon – May 2026 Update

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Central Valley Spring-run Chinook Salmon. Central Valley spring-run Chinook salmon typically return from the ocean and enter the Sacramento River system from February through June. Spawning occurs in Sacramento River tributaries from mid-September through early October with genetically distinct populations known from Clear, Mill, Deer, and Butte Creeks. Central Valley spring-run Chinook salmon also spawn in the Feather and Yuba rivers. Juveniles emigrate soon after emergence as young-of-year, or remain in or near their natal streams and emigrate as yearlings. Yearlings typically emigrate with the first flow increases in the fall and early winter. Similar to winter-run, Central Valley spring-run Chinook salmon populations have suffered significant declines in size. They are state and federally listed as threatened. CDFW

Butte Creek is a moderately sized tributary of the Sacramento River, located in California’s Central Valley near Chico, CA (Figure 1). It supports a core population of the threatened spring-run Chinook salmon native to the Central Valley and Sacramento River. Over the past decade, the Butte Creek watershed has experienced some of the largest Sierra fires of recent record.1 Prior to this period, the spring-run salmon in Butte Creek had represented a successful recovery within one of the Central Valley’s few remaining undammed streams.

I last updated the status of the Butte Creek spring-run salmon in a November 2024 post.  The spawning runs in spring-summers of 2023 and 2024 had been devastatingly low after suffering in the most recent three-year drought (2020-2022).  Some recovery in the spawning population in 2025 and 2026 brings a measure of optimism.

Problems with Recruitment

Low runs in 2023 and 2024 (Figure 2) suggest that brood years 2023 (BY23) and 2024 (BY24) will make limited contributions to runs between 2025 and 2028. Fewer eggs and any poor survival rates (e.g., from the 2024 fires or Thiamine deficiencies) will restrict recruitment of age 2-4 spawners from both brood years, limiting their contributions (recruitment into) to the future runs.

Initial survey findings show that the runs in 2025 and 2026 had fewer contributions from BY23 and BY24. Instead, most of the fish came from BY21 and BY22 spawners, whose offspring thrived during the wet years of 2023 to 2025 and gained advantages from fishery closures in those same years. Preliminary information on the 2026 run (not shown in Figure 2) indicates a low run, with only modest numbers of age-4 BY22 spawners, and lacking the normally predominant age-2 (BY 24) and age-3 spawners (BY 23).

The Cause

The cause of depressed recruitment in 2023 and 2024 was most likely poor spawning and early survival conditions during drought water years 2020-2022 that affected brood years 2020-2024.  The poor 2023 run was likely the consequence of poor survival of their source spawning adults (prespawn mortality in 2019-2021), eggs laid (2019-2021), and juveniles reared (2020-2022) of BY19-BY21 affected by the drought conditions of fall 2019 through winter-spring 2022.  For example, conditions in 2020 were very poor from low flows and high water temperatures from spring to fall (Figure 3).  The failure of PG&E’s Butte Canal in 2023 may have also been a factor.

The cause of the poor 2024 run is more complicated, because the number spawners in 2021 was high.  Drought conditions in fall 2021 and spring 2022 likely contributed to poor reproductive success and low smolt production (Figure 4).  However, the 2023 and 2024 ocean fisheries were closed, which should have more than doubled the normal run size.  The 2024 massive Park Fire may have contributed to the poor run, with lower summer-fall flows and higher water temperatures (Figure 5) and high pre-spawn mortality.

Other factors related to escapement (run size) include ocean conditions (e.g., the warm water blob and Thiamine deficiency), fishery harvest (or lack thereof), conditions in the lower Sacramento River and Bay- Delta.  All factors acting together in combination is yet another factor, with each factor potentially contributing to the other factors.

Conditions in the lower Sacramento River and Bay-Delta are changing for the worse.  For example, 2026 has been a relatively wet year, but poor snowpack and low March precipitation has led to stressful river and Bay-Delta habitat conditions in March during the peak of the adult spring-run salmon migration from the ocean.  Delta inflow was too low and water temperatures too high from mid-March to early April in 2026, almost as poor as drought year 2022 (Figures 6 and 7).  This problem led the Bureau of Reclamation to release a pulse flow from Shasta Dam in early April 2026 to help migrating salmon in the Sacramento River and its tributaries.

Solutions

The improvement of reliably robust runs of spring-run Chinook salmon is bound up in ongoing debates on how to manage Butte Creek salmon and their habitat.  Resource enhancement funds are scarce.  There is significant mitigation funding available from the PG&E 2023 flume failure that could play an important role.  More on solutions in upcoming posts.

Figure 1. Current distribution of spring-run Chinook salmon as reported by CDFG, 1998.

Figure 2. Butte Creek spring-run salmon escapement estimates by surviey 2001-2025. Source: CDFW.

Figure 3. Butte Creek water temperature and streamflow at USGS BCK-gage near Chico Feb-Oct 2020. Water temperatures above 18-20C are stressful to migrating and holding adult salmon.

Figure 4. Butte Creek water temperature and streamflow at USGS BCK-gage near Chico Aug 2021 to Jun 2022. Water temperatures above 18-20C are stressful to migrating juvenile salmon and holding adult salmon.

Figure 6. Flow in the Sacramento River at Freeport at the entrance to the north Delta in spring 2022-2026. Red line is recommended minimum Freeport flow. Source: CDEC.

Figure 7. Water temperature(F) in the Sacramento River at Freeport in the north Delta in spring 2022-2026. Red line is recommended maximum Freeport water temperature for spring salmon migrations. Source: CDEC.

Yuba River Fall-Run Salmon Crash 2016-2025

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The Yuba River Fall-Run Chinook salmon population “crashed” in the last decade.  Yuba River escapement ranged only from 2000-5000 spawners counted per year (Figure 1).  Such low escapements were last encountered only during the Central-Valley-wide crash during the 2007-2009 drought.

The decade-long low escapement reflects the effects of two droughts (2013-15 and 2020-22). Though the 2023-to-2025 escapements have increased slightly1 despite the 2020-2022 drought, the higher escapement reflects the benefit of fishery closures from 2023-2025 (fisheries normally harvest more than 50% of the adult stock).  Yuba escapement also reflects substantial numbers of hatchery strays from other rivers, including the Mokelumne and American River hatcheries, the Coleman hatchery on Battle Creek in some years, as well as the Feather River (Oroville) hatchery.  Small numbers of spring-run Feather hatchery strays from release locations near the mouth of the Yuba on the Feather River are also included.

The highest number of strays in the 2020-2022 period were from one group of Mokelumne River hatchery smolts released in 2018 to Half Moon Bay on the coast south of San Francisco.  The next highest group of strays are from American and Feather hatchery smolt releases to San Francisco Bay.  The trucked hatchery smolts do very well during drought years and thus tend to bias high the Yuba returns from drought years.  That is to say, drought effects on the natural Yuba run are even worse than indicated in escapement estimates.

I categorize the decade-long decline as a “crash” based on the population spawner-recruit (S/R) relationship (Figure 2).  The S/R “curve” generally reflects a positive logarithmic relationship between spawner and recruitment numbers.  The more eggs spawned generally leads to more adult returns three years later.  The S/R ratio, at least in the Central Valley salmon populations, also reflects drought or habitat conditions wherein recruits are generally depressed from density-independent habitat factors like droughts.  The six drought years in the last decade shown in Figure 2 as red dots have led to escapement levels in the lower-left quadrant of the S/R curve – a pattern often referred to as a population crash.

Often it is difficult for a population to recover from that situation because there are not enough spawners (eggs) to get the population out of the hole.  It would take a lot of good years in sequence to make that happen, unless certain actions are taken to accelerate the recovery.  For some suggestions on how this can be accomplished, see my past post on the subject.

Because of the supplementation of recruitment from other rivers and resulting mixed bag of spawners, the Yuba run is not threatened with extinction.  However, in its present state, its poor contribution to the commercial and recreational fisheries is a problem.  The Yuba is a magnificent salmon river that should contribute more salmon.

Figure 1. Yuba River Fall-Run Chinook salmon escapement estimates 1953-2024.

Figure 2. Yuba River Fall-Run Chinook salmon spawner-recruitment relationship wherein recruits are related to recruits three years earlier. Red dots represent escapement years where two years earlier it was a drought year during rearing and outmigration.

Sacramento River Salmon Redd Dewatering – Fall 2025

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I have previously reported on the dewatering of fall-run salmon redds in the upper Sacramento River near Redding during the early fall spawning season. Redd dewatering has a significant negative effect on salmon egg and fry production that translates to lower annual escapement and significantly contributes to the multi-decade decline in the population (Figure 1).

Figure 1. Escapement to the upper Sacramento River natural spawning area 1952-2024.

October is the peak in the fall-run Chinook salmon spawning season (Figure 2).  During early November 2024, the Bureau of Reclamation reduced Keswick Dam releases from the October average of 7000 cfs to 4000 cfs.  The flow reduction reduced water levels in the upper river spawning grounds below Keswick Dam from approximately the 11-ft water surface elevation (stage) to about the 8.5 ft level, a drop of about 2.5 feet.  In 2025, nearly identical flow management led to the same redd dewatering conditions (Figure 3). With most of salmon redds constructed in the 1-to-3 ft depth range, most were dewatered or only slightly watered and thus susceptible to high-egg-mortality conditions (low flow, warm water, low oxygen, and sedimentation).

The flow management strategy was also employed in recent wet years 2017 and 2019, although a more benign strategy was employed in historical wet year 2011 (Figure 4).  The issue has attracted inter-agency study and mention, but actions necessary to reduce the problem have been limited.

Figure 2. Stage and water temperature in the Sacramento River below Keswick Dam in fall 2024. Grey box denotes period when most fall run salmon spawn in the upper Sacramento River.

Figure 3. Stage and water temperature in the Sacramento River below Keswick Dam in fall 2025. Grey box denotes period when most fall run salmon spawn in the upper Sacramento River.

Figure 4. Stage and water temperature in the Sacramento River below Keswick Dam in fall of wet years 2011, 2017, and 2019.

American River Salmon Update – Spawning Season, November 2025

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In a 10/19/2023 post and a 11/21/2024 post, I discussed how the lack of access to Folsom Reservoir’s deep cold-water pool results in delayed natural and hatchery spawning of American River fall-run salmon.  Delays, and spawning in warmer water, cause reductions in spawning success, smolt production, recruitment into harvestable fishery stocks, and spawning escapement (run size) to the American River.  Lower salmon contributions from the American River significantly reduce California coastal and river salmon fishery stocks.  Poor production in the American River contributed to the closure of California salmon fisheries in 2023-2025.

During the 2020-2022 drought, Reclamation released water from the lower-level power bypass (sacrificing hydropower production) to provide the cold water (<55ºF) salmon needed for spawning in the ten-mile spawning reach from Nimbus Dam (near Fair Oaks gage) to the William Pond gage (Figure 1).  This is the prime spawning reach for salmon in the lower American River.  However, in the fall of the wetter years 2023-2025, Reclamation did not use the power bypass to release cold water (Figures 2 and 3), despite higher storage levels than during the drought (Figure 4).  The lack of cold water delayed natural spawning and hatchery egg taking, to the detriment of egg viability, fry production, and smolts reaching the ocean.

Ultimately, the number of adult salmon returning to the American River to spawn (escapement) is the important measure of success.  There are many factors that may contribute to the number of returns.  Recent returns are up (Figure 5).  The 2023 and 2024 returns were good despite having been the product of the 2020-2022 drought reproduction (Figurer 6).  Closed fisheries in 2023 and 2024 contributed to higher escapements.

I also believe efforts to improve fall water temperatures below Folsom during the drought improved both the wild and hatchery components of escapement.  I remain concerned that a return to warmer fall water temperatures will hinder future escapement.

I am also concerned with apparent efforts to sustain higher fall 2025 reservoir levels (see Figure 4) by reducing tailwater stream flow rates (Figure 7).  Such low flows reduce the quantity and quality of salmon spawning habitat.  Many critical spawning side channels become dewatered at such low flows1.  Main channel velocities, substrate, and depths are also compromised at low flow rates.

Reclamation  also reduced funding for the salmon hatchery and for river habitat projects in 2025, and will likely do the same in subsequent years.  This strategy will not help to recover American River salmon stocks to levels that once again can contribute toward commercial and recreational salmon fisheries.

Figure 1. Map of three CDEC gaging stations on the lower American River.

Figure 2. Average daily water temperatures in Nov-Dec period at William Pond gage 2021-2025. Red line (55ºF) denotes upper safe level for Chinook spawning.

Figure 3. Average daily water temperatures in November period at Fair Oaks gage 2021-2025. Red line (55ºF) denotes upper safe level for Chinook spawning.

Figure 4. Late summer and fall Folsom Reservoir water storage (acre-feet) 2021-2025.

Figure 5. Adult salmon escapement estimates for the American River 1975-2024. Source: Grand Tab.

Figure 6. American River spawner/recruit relationship – { log10(escapement) -3.5]. Number is year of escapement (recruits). Color denotes water year type two years prior. Red is dry, green is normal, and blue is wet. Note escapement in 2023 and 2024 are red, denoting spawning and rearing occurred two years earlier in dry water years.

Figure 7. Streamflow (daily average) in the American River at Fair Oaks gage Aug-Nov period 2021-2025.

Prognosis for the 2026 Salmon Season

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Since the year 2000, Fall Run Salmon adult escapement (run total) to the Sacramento River system (mainstem and tributaries) dropped from a peak of 400,000-800,000 to 100,000 or less (Figure 1).  The lowest escapement, near 50,000 in 2009, occurred with the fishery closed.  More recently, escapement fell below 100,000 in 2017 and 2022, with the fishery open.  With the fishery closed in 2023 and 2024, escapement increased to near 150,000, allowing for a very limited recreational fishery in 2025.

The fishery harvests are about 50% of the fishable stock (or what could be available for escapement, see Figure 2).   A normal fishery would lead to escapements under 100,000 in recent years.  These escapement levels would likely lead the Pacific Fisheries Management Council and California Fish and Game Commission to restrict the fishery again in 2026.

However, the agencies may be inclined to allow a fishery with some restrictions based on positive trends in habitat conditions and the higher jack salmon numbers in the limited 2025 fishery.  Water years 2023 and 2024 were relatively wet, which often leads to good survival conditions, and is likely to lead to a projection of good salmon numbers available in 2026.

I am inclined to greater optimism for 2026, as I was in 2025,1 because of the likely higher numbers of salmon in the ocean and potentially returning to the rivers next year.  The various factors supporting my reasoning are summarized below:

  1. Jack numbers were up based on escapement surveys, agency test fisheries, and the limited 2025 fishery.
  2. Brood years 2023 and 2024, which will make up much of the fishable stock in 2026, likely had good survival and production in wet year 2023 and above-normal water years 2024 and 2025 (compared to dry years 2020-2022). Fishery impacts to these broodyears were also minimal in 2024 and 2025.
  3. Hatchery smolt production in 2023-2025 was also good, with some improvements over the 2020-2022 drought years. Hatchery smolts released to the rivers near the hatcheries likely had a much improved survival rate in 2023-2025 over that in the drought years, because of higher transport flows.  Millions of hatchery smolts trucked to Bay and coast pens for release also had improved survival compared to river releases.
  4. Fishery restrictions in 2023-2025 likely improved wild salmon spawning numbers, leading to good wild salmon recruitment in the three wetter years.
  5. A 2026 fishery would likely benefit from good overall broodyear 2023 and 2024 survival and production.
  6. My estimate of the fishable stock of broodyears 2022-2024 in the ocean is 400,000-800,000 two-to-four year-old salmon. Under a 50% harvest, escapement in 2026 would be 200,000-400,000 (likely somewhat less, as not all the fishable stock would spawn in 2026).  I support this hypothesis with a descriptive Spawner-Recruit model that I developed (Figure 3) that has reasonably predicted escapement in the past several years.

If the fishery remains restricted for a fourth year in a row, escapement could reach or exceed 500,000 adult salmon, a number far in excess of the management target escapement of 120,000-180,000.  Such a case would unnecessarily deprive commercial and recreational fisheries of the potential harvest of 200,000 or more adult salmon in the ocean and rivers in 2026.

I remain concerned with the potential adverse effects on wild salmon stocks from fishery harvest (Figure 4). Limiting wild salmon harvest by adjusting fishery timing and location, restricting catches to marked hatchery fish (mark-selective fishery rules), and improving spawning, rearing, and migrating habitat, could help address these issues.

I am also concerned with the poor returns (escapement) from the Coleman Hatchery’s in-river smolt releases that result in low fishery contributions, low escapement (Figure 5), and high rates of adult spawner straying to other spawning streams.  To address this problem agencies have considered higher smolt production, increased near-hatchery releases, trucking smolts to Bay-Delta-Coast, transporting eggs to Coleman from other hatcheries, hatchery fry releases to river floodplain and estuary habitats, reducing in-river predators, and improving migrating habitat during smolt releases.  All of these measures could help minimize the extent of this problem.

Figure 1. Note the very high escapement around the turn of the century. The improvement is attributable to the wet decade (1995-2005), increased hatchery production, trucking hatchery smolts to the Bay-Delta, and more protective management of fisheries and water supply. Subsequent poor escapement periods are generally attributed to multiyear drought impacts and over-fishing of drought-impacted salmon broodyears.

Figure 2. A 50% harvest rate is about what has occurred over the recent decade under normal fishery regulations.

Figure 3. This complicated semi-quantitative spawner-recruit model display attempts to show that a normal spawner-recruit relationship is overwhelmed by hatchery, harvest, and water-year hydrology effects on recruitment. I predict 2026 escapement (recruits) with a normal fishery will fall into the green box (200,000-400,000) because 2023 and 2024 were wetter (blue) water years. Without a fishery, escapement would be near or above 500,000, a number well above the target escapement.

Figure 4. These spawner estimates for the upper Sacramento River represent the natural spawning escapement of the mainstem Sacramento River. The decline in this escapement component is considered a key factor in the overall decline of the Sacramento River fall-run salmon population. The decline is generally attributed to increasingly poor habitat conditions (water flows and temperature, pollution, predation, and water diversions) and over-harvest of wild or natural-born fish in the fishery.

Figure 5. Adult fall-run salmon returns to the Coleman Hatchery in the upper Sacramento River have been below 10,000 for several years. Preliminary estimates for 2025 indicate sharply higher returns to the Coleman Hatchery (near 40,000 or higher), the result of good hatchery smolt survival, no fishery for three years, and good river conditions this summer and fall.