The State of California, after initially complying with the Bureau of Reclamation’s request to remove the Fall X2 protections for Delta smelt,1 has had second thoughts. Instead, the Department of Water Resources has cut exports at Clifton Court to keep X2 (roughly 3800 EC) at km74 (near Mallard Island).
The Northern California Water Association stated on September 14: “For the better part of three decades, greater and greater quantities of water were dedicated to instream flows with the expectation that this “silver bullet” of flows, on its own, would solve the diverse assortment of fish mortality causes. The result, on the rivers and streams where this was the primary or only action used to promote survivability, was generally unproductive.” This statement is so misleading and untrue. It is outright propaganda. Streamflow is absolutely necessary to maintain salmon, steelhead, sturgeon, and smelt throughout the Central Valley, and reductions in streamflow have been directly related to fish mortality and population abundance.
The truth is that each year the state and federal water projects in the Central Valley keep squeezing more and more water from the system. There is no better example than in 2017, a near record water and snowpack year. Even in this very wet water year, water managers are saving water for use in future years rather than applying it as required for the fish. Their excuse is that they must save the water to preserve the cold-water pool in Shasta reservoir for the summer and fall salmon spawn. While that is a true need in drier years, it is not in wet years when Lake Shasta fills.
Water users got full allocations this year. Delta exports reached a near record 6.2 million acre-feet (MAF) of water in Water Year 2017. So instead of keeping river flows up to meet salmon needs with water that users did not need, project managers saved the water for next year’s use. While saving Shasta storage for next year is not a bad thing, saving this year’s fish water for next year’s contractor allocations is certainly not good for fish species near extinction.
How is the fish water saved? The basic approach is to limit Shasta releases and violate fish water temperature standards in the 200-miles of the Sacramento River down to the Delta. The standards require maintaining spring-to-fall water temperature at Red Bluff at 56oF and at 68oF between Red Bluff and the Delta. It takes releases of cold water from Shasta to maintain the Red Bluff standard. In the lower river, it is the flow rate that maintains the standard. With Sacramento River contractors receiving their full allocations and the Delta diverters getting all the water they needed in 2017, there was an overt effort to save the water in Lake Shasta at the expense of the salmon.
The water managers and resource agencies started by moving the Red Bluff 56oF standard compliance point upstream 33 miles to Balls Ferry, leaving over half the upper 60-mile salmon spawning reach without protection. That action is for dry years, not wet years. The combination of lower and warmer Shasta/Keswick releases resulted in excessively high water temperatures near Red Bluff (Figure 1). Lower Shasta releases and lower flows below Red Bluff led to low flows and high water temperatures 120 miles downstream at Wilkins Slough during the summer (Figure 2). By ignoring the water temperature standards, water managersheld approximately 300 thousand acre-feet (TAF) of extra water in storage at Lake Shasta (the amount in yellow area of Figure 2). The standards were also exceeded 40 miles further downstream at Verona (Figure 3); again, the amount that would have been necessary to maintain the standard was about 300 TAF. The effect translated to higher water temperatures 30 miles further downstream in the Delta at Freeport (Figure 4).
Was the 300 TAF of storage saving necessary to preserve Shasta’s cold-water pool to protect salmon in the upper river spawning area over the summer and into the fall? No, and certainly not at the expense of salmon, steelhead, sturgeon, and smelt over the summer in the river, Delta, and Bay. First, there was sufficient cold water to maintain the standards through the summer, regardless what the agencies say or their models predicted. There was 400 TAF more water in the Shasta cold-water pool than in 2016 (Figures 5 and 6). Standards had been maintained in the two previous wet years, 2006 and 2011. Had water managers released the water for fish in 2017, the end-of-September storage would have been 3.1 MAF instead of the projected 3.4 MAF. The 3.1 MAF is adequate and within project goals. It is twice the end-of-September storage of 2015, and 10% higher than 2016. Second, if the 300-TAF was too high a price, some or all of it could have been allocated from the over 8 MAF of water diverted from the Sacramento River and the Delta for water use. Third, if a shortage of the cold-water was a concern, less warm water from the Trinity-Whiskeytown trans-basin diversion could have been delivered to the Sacramento River, or less peaking hydropower generation at Shasta Dam could have occurred: both are known factors in cold-water pool depletion.
In summary, water project managers in the Central Valley saved 300 TAF by not meeting water temperature standards for the Sacramento River in summer 2017. In the whole scheme of 2017 water management it seems “small potatoes” (Figure 7), but maintaining the long-held standard is important for salmon. There was no valid excuse for not meeting the water temperature standards. Salmon, steelhead, sturgeon, and smelt suffered unnecessarily from the violation of the water temperature standards.
Figure 1. Summer 2017 water temperature in the Sacramento River at Red Bluff (RM 243). Red line denotes 56oF water temperature standard necessary to protect spawning salmon, steelhead, and sturgeon. (Base chart source: CDEC)
Figure 2. Summer 2017 water temperature at Wilkins Slough (Sacramento River at RM 125). Multiple temperature lines indicate daily highs and lows. Red line is the 20oC (68oF) standard. Yellow area is the roughly 300 TAF that was saved by not meeting the standard (maintaining about 7000 cfs). (Base chart source: USGS)
Figure 3. Summer 2017 water temperature at Verona (Sacramento River at RM 80). Multiple temperature lines indicate daily highs and lows. Red line is the 20oC (68oF) standard. Yellow area is the roughly 300 TAF that was saved by not meeting the standard (maintaining about 17,000 cfs). (Base chart source: USGS)
Figure 4. Summer 2017 water temperature at Freeport (Sacramento River channel in north Delta). Multiple temperature lines indicate daily highs and lows. Green line is the flow that would have occurred to maintain upriver water temperature standards. Yellow area is the roughly 300 TAF that was saved by not meeting the standard. Had this water reached the Delta and Bay it would have benefitted Delta smelt by keeping the Delta cooler and maintaining the low salinity zone further downstream in the Bay. (Base chart source: USGS)
Figure 5. Water storage and temperature distribution profile in Lake Shasta in 2016. (Source: USBR CVO)
Figure 6. Water storage and temperature distribution profile in Lake Shasta in 2017. (Source: USBR CVO)
Figure 7. Water Year 2017 flows in the Sacramento River at Wilkins Slough. Near 300 TAF of Shasta storage was saved by reducing flows below the norm in summer (red circle). Base chart source: USGS.
On September 28, the US Fish and Wildlife Service (Service) approved removal of fall protections for Delta smelt that have been in place since 2008. The action allows south Delta pumping plants to export an additional 400,000 acre-feet of water on top of the 6.2 million acre-feet already exported through September in Water Year 2017. The water, earmarked for the Bay and Delta smelt, instead will go to southern California to fill reservoirs.
The action allows X2, the 2 parts per thousand salinity prescription, to be moved from Chipps Island (river kilometer 74) upstream to Collinsville (river kilometer 81). The action occurs simply by increasing south Delta exports, keeping all other factors constant (Figures 1 and 2). Exports have risen from 8,000 cfs to the maximum of 11,700 cfs. Delta net freshwater outflow to the Bay has fallen from 15,000 cfs to 10,000 with the higher exports and slowly falling Delta inflow (Figure 3). Salinity at Collinsville has nearly reached its new allowed level (Figure 4).
The effects of the higher exports can be seen in flows measured in Old River in the central Delta near Highway 4 (Figure 5). Flows through nearly the entire tidal cycle are negative as water rushes to meet the maxed-out exports in the south Delta. The daily average, also called OMR, is -5,000 cfs. Other channels, including the lower San Joaquin River, make up the remainder of the 11,700 cfs level of export.
The Service concludes that “the proposed Fall X2 action for 2017 would not adversely affect Delta Smelt” P5. They state that they see no evidence that the change will affect the smelt population. This is an incredible conclusion given the present state of the population (Figure 6). There is simply no basis for the conclusion other than saying the smelt are all gone anyway.
Reductions in Delta outflow, upstream movement of X2 into the western Delta, and negative net flows in any Delta channel are a direct and real threat to Delta smelt and their habitat (as the Service points out in its approval letter on page 8). In Reclamation’s request for the action, Reclamation frames the issue an adaptive management action within the context of the original 2008 biological opinion prescription. With the species on the brink of extinction, such negative “adaptive management” actions are not the logical approach to be taken toward recovery of the species. The prescription allowed adaptive management actions to help toward recovery, not to top off southern California reservoirs.
Sad thing is, 2017 is only the second year with hydrological conditions applicable to the 2008 fall X2 prescription. In 2011, the first and now only application of the prescription, the fall X2 requirement proved to contribute significantly toward recovery, as shown in the Fall Midwater Trawl Survey. I suspect there will be no similar “bounce” in the October-through-December survey index in 2017.
Figure 1. Tracy (federal) exports in September 2017.
Figure 2. Clifton Court (state) exports in September 2017.
Figure 3. Delta outflow to Bay in summer 2017.
Figure 4. Salinity (EC) at Collinsville (river kilometer 81) in September 2017.
Figure 5. Hourly flow in cfs in Old River in central Delta near Highway 4 crossing.
Figure 6. Delta smelt summer townet index 1969-2017. (CDFW data).
Figure 7. Fall midwater trawl index for Delta smelt
Dave Vogel and I are contributing a series of posts on the potential effects of the WaterFix Twin Tunnels Project on Delta fishes. Our focus to date has been on salmon. In this post, I focus on the “other” fishes of the Bay-Delta that will be harmed by WaterFix.
Striped bass will be devastated by WaterFix tunnel intakes located on the lower Sacramento River. The main spawning run of striped bass is in spring in the lower Sacramento River from near Colusa down to the tidal Delta. Eggs and larvae are buoyant and are carried by currents to the tidal Delta and Bay. Nearly all the eggs and larvae must pass the tunnel intakes. The original Peripheral Canal (circa 1980) had a provision to limit diversions during the striped bass spring spawn. The Vernalis Adaptive Management Program (VAMP) from the late 1990s to the late 2000s protected striped bass in spring with higher Delta inflows and reduced exports (generally a limit of 1500 cfs from mid-April to mid-May). The D-1485 Delta standards had a limit on exports through June (6000 cfs). The proposed WaterFix would have spring exports up to 15,000 cfs (9000 from tunnels and 6000 from existing South Delta pumps). Those eggs and larvae that pass the tunnel intakes would be subject to the pull of south Delta exports without the benefit of the extra flow taken at the tunnel intakes.
Longfin smelt will suffer from reduced flows in the winters of drier years. The WaterFix will take a quarter to a third of sporadic uncontrolled winter flow pulses that support the spawn of longfin smelt in drier years. The lower flows will force longfin to spawn further upstream in the Delta where they are vulnerable to central and south Delta exports. The longfin population declines in drier year sequences; the WaterFix will add to downward population pressure.
A recent post by Moyle and Hobbs at UC Davis suggests Delta smelt will be better off under WaterFix:
“The status quo is not sustainable; managing the Delta to optimize freshwater exports for agricultural and urban use while minimizing entrainment of delta smelt in diversions has not been an effective policy for either water users or fish.” Comment: So allowing the water projects to take more water will help? Delta inflow and outflow are the key factors in Delta smelt population dynamics – both will be negatively affected by WaterFix.
Moyle and Hobbes point out “reasons to be optimistic about Waterfix,” as follows:
Steelhead, much like salmon, are affected by ancillary changes in reservoir storage and releases, river flows, Delta inflow and outflow, water temperatures, and turbidities. But the greatest threat to steelhead, as for salmon, is from the three large intakes and their screen systems, which will adversely affect young steelhead passing on their way to the ocean.
Splittail were once on the endangered species list. Today, splittail numbers, especially for recruitment of juveniles, are way down, well below the numbers occurring at the time of their listing. Splittail from the Bay-Delta migrate upstream into river floodplains upstream of the Delta to spawn in spring. The three largest floodplain areas are in the Yolo Bypass, Sutter Bypass, and the lower San Joaquin River wildlife areas. The Sutter group will be at high risk to fry-stage entrainment/impingement at the tunnel intakes. The San Joaquin group will have a continued risk to south Delta exports, a risk made worse by the diversion of inflow from the Sacramento River into the tunnels.
American shad migrate from the ocean to Valley rivers to spawn in the spring. Eggs, larvae, and fry from the major spawning rivers of the Sacramento Valley must pass the tunnel intakes in the north Delta. Like the striped bass, these lifestages of American shad will be devastated by entrainment and impingement at the tunnel intakes.
Like salmon and steelhead, Pacific lamprey migrate from the ocean to spawn in Valley rivers during the spring. Young larval lamprey would pass the tunnel intakes on their migration back to the ocean. Because they are weak swimmers they would be highly vulnerable to impingement or predation at the screens.
Many species of native minnows and suckers migrate upstream from the Delta to Valley rivers to spawn in spring and summer. Their young must pass the tunnel intakes on their return to the Delta, and thus will be at risk to entrainment/impingement at the tunnel screens.
The Delta smelt Summer Townet Index is at record low numbers in recent years including the wet year 2017 index.
The striped bass Summer Townet Index remains near record low in 2017.
The much anticipated salmon season opener on the Sacramento River will be a bust, just as it was last year.
USA Fishing reports on July 15, 2017: “The Central Valley rivers open to salmon fishing on Sunday July 16th. The good news is that reservoirs are full and we have cold water and much higher releases than we have seen (for the opener) in years.”
The sad news is that despite record inflow to reservoirs, the “new norm” in the lower Sacramento River is low water, high water temperatures, and no salmon during summer. This “new norm” is a consequence of the fact that federal and state regulators have changed the rules as they are applied on the ground, with little or no public input. Federal EPA and State water quality standards are no longer being enforced. The summer 68oF limit for the lower Sacramento River between Red Bluff and the Delta no longer applies. The “new norm” is 72-75oF (22-24oC), as is evident in Figures 1 and 2, below. This new norm is in direct contrast to 2006 and 2011, the last two wet years (Figures 3 and 4). The apparent reason is an absolute prioritization of using Shasta Reservoir storage for water contractors and winter-run salmon. Fall-run salmon, the backbone of ocean and river salmon fishing alike, no longer rate protection. Shasta Reservoir is just about full, but the Bureau of Reclamation is using none of the water stored there to maintain water temperatures in 200 miles of the lower Sacramento River.
Why are flows and water temperatures important in the lower 200 miles of the Sacramento River? In spring, millions of upper river hatchery and wild salmon and steelhead smolts pass through the lower river on their way to the ocean. Also in spring, white and green sturgeon spawn and rear in the lower river. Adult winter-run and spring-run salmon also pass upstream through the lower river during the spring on their way to upper river and tributary spawning grounds. In summer, adult fall-run salmon begin their upstream run in July, with a peak in August-September. The lower river is home to rearing juvenile salmon, steelhead, and sturgeon all summer; high water temperatures and low flows are detrimental to their survival and favorable to predators. High water temperatures and low flows in the river also increase the likelihood of higher water temperatures and lower flows through the Delta to the Bay, leading to poorer survival of longfin smelt, Delta smelt, and other native Delta fishes.
Figure 1. Water temperature (daily high and low) and flow at Wilkins Slough of lower Sacramento River, June-July 2017. Source for all figures: https://waterdata.usgs.gov/nwis/
Figure 2. Water temperature (daily high and low) and flow at Verona of lower Sacramento River, June-July 2017.
Figure 3. Water temperature (daily high, median, and low) and flow at Wilkins Slough of lower Sacramento River, June-July 2011.
Figure 4. Water temperature (daily high and low) and flow at Wilkins Slough of lower Sacramento River, June-July 2006.